Ana.Lalovic: /* SEXTRACTOR for Ubuntu 24.04 */

2024-09-11T13:04:43Z

SEXTRACTOR for Ubuntu 24.04

Ana.Lalovic at 13:03, 11 September 2024

2024-09-11T13:03:53Z

Ana.Lalovic: Created page with "This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. In..."

2023-11-10T12:38:51Z

Created page with "This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. In..."

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This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. Installation of PSFEX is added. It will work under Ubuntu 8.04 32-bit.

== SEXTRACTOR part I ==

* SExtractor
Download sextractor-2.8.6.tar.gz from http://astromatic.iap.fr/software/sextractor
tar zxvf sextractor-2.8.6.tar.gz
cd sextractor-2.8.6/

== FFTW ==

* FFTW
Download fftw-3.2.2.tar.gz from http://www.fftw.org/download.html via http
cd sextractor-2.8.6/
wget http://www.fftw.org/fftw-3.2.2.tar.gz .
tar zxvf fftw-3.2.2.tar.gz
cd fftw/
./configure --enable-threads
# If compiler problems reported - do sudo synaptic and find and install gfortran and then do ./configure --enable-threads again
make
sudo make install

== CLAPACK ==

* CLAPACK
Download clapack.tgz from http://www.netlib.org/clapack/clapack.tgz
cd /home/[user]/
wget http://www.netlib.org/clapack/clapack.tgz .
gunzip -c clapack.tgz | tar xvf -
cd CLAPACK-3.2.1/
cp make.inc.example make.inc
In file: make.inc 
replace F2CLIB = ../../F2CLIBS/libf2c.a with F2CLIB = F2CLIBS/libf2c.a (in 2 places) 
In file: CLAPACK-3.2.1/TESTING/LIN/Makefile replace $(F2CLIB) with ../../$(F2CLIB); replace $(BLASLIB) with ../../BLAS/SRC/$(BLASLIB) 
In file: CLAPACK-3.2.1/TESTING/EIG/Makefile replace $(F2CLIB) with ../../$(F2CLIB); replace $(BLASLIB) with ../../BLAS/SRC/$(BLASLIB) 
In files: CLAPACK-3.2.1/BLAS/TESTING/Makeblat[1-3] replace $(BLASLIB) with ../SRC/$(BLASLIB); replace $(F2CLIB) with ../../$(F2CLIB) 

* sed -i s/"\$(F2CLIB)"/"..\/..\/\$(F2CLIB)"/g Makeblat[1-3] # Something like this may help

make f2clib # If it exits with errors -- fix them (it could be only paths like above) before proceeding
sudo make

== ATLAS ==

* ATLAS
sudo apt-get install libblas-doc libblas3gf libblas-dev libblas-test gfortran
sudo synaptic (search by lapack and libgsl)

INSTALL: atlas3-base atlas3-doc atlas3-sse2 lapack3 libatlas3gf-sse2 libblas3gf libblas-test libgsl0-dbg libgsl0ldbl liblapack3gf refblas3

Download atlas3.8.3.tar.gz from http://sourceforge.net/projects/math-atlas/files/
cd /usr/
sudo wget http://sourceforge.net/projects/math-atlas/files/Stable/3.8.3/atlas3.8.3.tar.gz/download .
sudo zxvf atlas3.8.3.tar.gz
cd ATLAS/
sudo mkdir linux
cd linux
sudo /usr/bin/cpufreq-selector -g performance # not important, skip
sudo ../configure -b 32 --with-netlib-lapack=/home/[user]/CLAPACK-3.2.1/lapack_LINUX.a # Put your user name
sudo make build
sudo make check
Successful cmd will list 2 errors that should be ignored (as it says) like this: 

DONE BUILDING TESTERS, RUNNING: 
SCOPING FOR FAILURES IN BIN TESTS: 
fgrep -e fault -e FAULT -e error -e ERROR -e fail -e FAIL \ 
bin/sanity.out 
8 cases: 8 passed, 0 skipped, 0 failed 
4 cases: 4 passed, 0 skipped, 0 failed 
8 cases: 8 passed, 0 skipped, 0 failed 
4 cases: 4 passed, 0 skipped, 0 failed 
8 cases: 8 passed, 0 skipped, 0 failed 
4 cases: 4 passed, 0 skipped, 0 failed 
8 cases: 8 passed, 0 skipped, 0 failed 
4 cases: 4 passed, 0 skipped, 0 failed 
DONE 
SCOPING FOR FAILURES IN CBLAS TESTS: 
fgrep -e fault -e FAULT -e error -e ERROR -e fail -e FAIL \ 
interfaces/blas/C/testing/sanity.out | \ 
fgrep -v PASSED 
make[1]: [sanity_test] Error 1 (ignored) 
DONE 
SCOPING FOR FAILURES IN F77BLAS TESTS: 
fgrep -e fault -e FAULT -e error -e ERROR -e fail -e FAIL \ 
interfaces/blas/F77/testing/sanity.out | \ 
fgrep -v PASSED 
make[1]: [sanity_test] Error 1 (ignored) 
DONE 
make[1]: Leaving directory `/usr/ATLAS/linux' 


sudo make time
sudo make install
Now the libraries should be at /usr/local/atlas/.

== SEXTRACTOR part II ==

* CONTINUE WITH SEXTRACTOR
cd ~/sextractor-2.8.6/
./configure --with-atlas=/usr/local/atlas/lib --with-atlas-incdir=/usr/local/atlas/include
If an error occures: configure: error: CBLAS/LAPack was compiled without multithreading support! Exiting., do
sudo ./configure --disable-threads --with-atlas=/usr/local/atlas/lib --with-atlas-incdir=/usr/local/atlas/include
# It seems to me that this error occurs if you have a single CPU. With Core Duo processor I haven't experienced any problems.
And then (in both cases) continue with
sudo make
sudo make install

This should do the trick. Further, for installation of GIM2D: 
Download fuzzy.v32.linux.tar.gz from https://www.astrosci.ca/users/GIM2D/installation.html 
Save it in : /iraf/iraf/unix/ 
tar -xvpf fuzzy.tar
Add 2 lines to login.cl in your home dir: 
set fuzzy = "/iraf/iraf/unix/fuzzy/" 
task $fuzzy.pkg = "fuzzy$fuzzy.cl" 

Now, when you start iraf with goiraf (or whatever you are using) you will see new package fuzzy. Enjoy!

== PSFEX ==

*PSFEX

In addition to sextractor, for installation of [http://astromatic.iap.fr/wsvn/public/listing.php?repname=public+software.psfex&path=%2Ftrunk%2F#path_trunk_ psfex] that makes psfs:

1. Download all .tar.gz files and all stand alone files (The easiest way: check trunk dir and click on the Tarball right and save file) 
2. Unpack the file: gunzip psfex-trunk.r149.tar.gz | tar xvf - 
3. Change configure to be executable if necessary and the dir name to psfex (if you want) 
4. Enter psfex/ and run 
sudo ./configure --with-atlas=/usr/local/atlas/lib --with-atlas-incdir=/usr/local/atlas/include
# If it says sth. like fftw -- single precision not found blah, blah GO BACK to fftw dir and do 
./configure --enable-threads
./configure --enable-single --enable-threads
sudo make
sudo make install
#And then return to psfex dir and proceed with:
sudo ./configure --disable-threads --with-atlas=/usr/local/atlas/lib --with-atlas-incdir=/usr/local/atlas/include
5. Run
sudo make
* If it reports a problem in seeing 8 spaces instead of tabs, do
sed -i s/" "/"\t"/g Makefile
6. continue with
sudo make install

Good luck with the rest...

@@ Line 14: / Line 14: @@
   # Additional files: /usr/share/source-extractor/
---------- BELOW THIS LINE ---------
+--------- BELOW THIS LINE -> OLD AND OBSOLETE ---------
 This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. Installation of PSFEX is added. It will work under Ubuntu 8.04 32-bit.

← Older revision		Revision as of 13:03, 11 September 2024
Line 1:		Line 1:
		+	== SEXTRACTOR for Ubuntu 24.04 ==
		+
		+	sudo apt install libatlas-base-dev libblas-dev liblapack-dev
		+
		+	wget https://github.com/astromatic/sextractor/archive/refs/tags/2.25.0.tar.gz .
		+	tar zxvf 2.25.0.tar.gz
		+	cd sextractor-2.25.0/
		+	sh autogen.sh
		+	./configure -latlas -lblas
		+	sudo make
		+	sudo make install
		+
		+	# Executable: /usr/bin/source-extractor
		+	# Additional files: /usr/share/source-extractor/
		+
		+	--------- BELOW THIS LINE ---------
		+	-------- OLD AND OBSOLETE ---------
		+
	This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. Installation of PSFEX is added. It will work under Ubuntu 8.04 32-bit.		This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. Installation of PSFEX is added. It will work under Ubuntu 8.04 32-bit.

SextractorInstallation - Revision history

Ana.Lalovic: /* SEXTRACTOR for Ubuntu 24.04 */

Ana.Lalovic at 13:03, 11 September 2024

Ana.Lalovic: Created page with "This installation manual may be found at:[http://ubuntuforums.org/showthread.php?p=8504839#post8504839 Ubuntu forums]. Just in case it is copied here and slightly modified. In..."